[Chimera-users] Measure buried area

Jian Guan jug25 at psu.edu
Fri Nov 15 09:23:16 PST 2013

Hi all,

I use measure command to calculate the buried area between capsomer and Fab.
My input file is pentamer.pdb and Fab.pdb. I made surface model for them
respectively and use the command line as shown below:

measure buriedArea #3 #2 probeRadius 1.4

However, it replied as "Surface calculation failed"

I tried also delete all non-binding units in the pentamer, it still can not

Does anyone know how to deal with that? Thank you so much.

Sincerely yours,


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