[Chimera-users] Problems with binding site representation

Elaine Meng meng at cgl.ucsf.edu
Sat Nov 9 08:09:25 PST 2013

Hi Vigneshwari,
You can see the manual page by using command "help measure" or you can see it on our website here:


Elaine C. Meng, Ph.D.                       
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Nov 9, 2013, at 3:31 AM, vigneshwari subramanian wrote:

> Hi Elaine,
> Thank you so much for your timely help. I could actually make the same figure. I need to do the same for our dataset.
> It would be really helpful if you can tell me what each of these parameters mean. I think you gave an overview. But I would like to know what each of these mean.
> 3 slab -.1,0 
>  measure contactArea #0.2 #0.1 3 slab -.1,0 color tan
> measure contactArea #0.2 #0.1 2.99 slab -.11,-.01 color cornflowerblue
> I checked the manual. But I couldn't find any information about measure contactArea.
> I am there in the chimera list.
> regards,
> vigneshwari

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