[Chimera-users] Docking with Autodock vina (Chimera)

felipe vasquez anfelvas at gmail.com
Wed Jul 24 09:07:41 PDT 2013

Hi Elaine,
Thanks for your message. I think I finally fixed the problem.


*Andrés Felipe Vásquez J., MSc.*
Grupo de Fisiología Molecular
Subdirección de Investigación Científica y Tecnológica
Dirección de Investigación en Salud Pública
Instituto Nacional de Salud
Avenida calle 26 No. 51-20 - Zona 6 CAN
Bogotá, D.C., Colombia

2013/7/23 Elaine Meng <meng at cgl.ucsf.edu>

> Hi Andrés,
> I just tried it and it seems to be working fine.  Maybe when you got those
> messages, the web service at NBCR was temporarily down… in that case, there
> is nothing that you (or we) can do, other than downloading and installing
> AutoDock Vina on your own computer and running it locally.  There is a
> "download" link at the AutoDock Vina website:
> <http://vina.scripps.edu/>
> You can specify running locally in the Chimera AutoDock Vina tool, in the
> "Executable location" section near the bottom of the dialog.
> Best,
> Elaine
> ----------
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> On Jul 23, 2013, at 7:51 AM, felipe vasquez <anfelvas at gmail.com> wrote:
> > I am trying to perform a docking process via the tool 'autodock vina'
> embedded into chimera menu. However, once I am baout to run the process, I
> always obtain the same message:
> >
> > Service 'opal:vina_1.1.2' is unavailable.
> >
> > What can I do in order to overcome this problem? Thanks in advance for
> your help.
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