[Chimera-users] Structure minimization for model with rigid body

[danashah at post.tau.ac.il]

Hi all,

We're interesting in performing a structure minimization for a model,  
while treating a part of the model as a rigid body.
Is "fragment true" the best way to do that, or is there a different option?

http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/minimize.html#fragment

Of course the "spec" option will define all the atoms which are not in  
the rigid body part....

Best,
Dana.

__
Dana Sachyani
Joel Hirsch's Lab
Faculty of Life Sciences
Tel Aviv University
Ramat Aviv, Israel
e-mail: danashah at post.tau.ac.il