[Chimera-users] Color by ramachandran probability? Or molprobity overlap?

Oliver Clarke olibclarke at gmail.com
Tue Dec 10 18:34:32 PST 2013

Hi all,

Quick question, just wondering if there is any way to color a structure by Ramachandran probability? Or by steric overlap scores for each atom as generated by mol probity? 

Either of these would be very handy as a way of getting a quick graphical overview of trouble spots in a structure. It seems like Chimera “knows about” Ramachandran plot data, (as one can generate such plots from the model panel) but I can’t find any convenient way to display this data on the structure.

Many thanks,

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