[Chimera-users] sphgen format

Brian Fochtman brianfochtman at gmail.com
Thu Sep 13 15:32:59 PDT 2012


Hello,
  I read in the release notes for version 1.6 that Chimera is now able to
input files in the dock .sph format.  Thank you for this feature, it will
be very helpful.  Unfortunately I am having some trouble using it.  (File
-> Open -> file.sph) declares a syntax error for the following file (I've
only included the beginning of the file because the output says the synax
error is on line 2).  Is there another method to read in these files?
  Thank you,
          Brian Fochtman


cluster     1   number of spheres in cluster    72
    1  20.51900 -17.55400  15.86300   0.700
1
    2  21.04300 -18.55700  16.07400   0.700
2
    3  22.17700 -17.60500  16.24100   0.700
3
    4  22.17500 -17.84200  15.30900   0.700
4
    5  21.41300 -20.08800  15.15700   0.700
5
    6  20.64000 -20.83100  16.58800   0.700
6
    7  21.63200 -18.65500  14.15300   0.700
7
    8  23.13800 -16.98900  16.54500   0.700
8
    9  21.18800 -21.21200  14.71200   0.700
9
   10  17.88800 -26.45300  19.89900   0.700
10
   11  21.83900 -17.33000  12.81300   0.700
11
   12  21.28600 -20.42100  13.28900   0.700
12
   13  23.77100 -15.65400  16.91100   0.700
13
   14  21.15100 -21.76500  13.92000   0.700
14
   15  21.38500 -19.46300  12.20200   0.700
15
   16  20.39500 -21.75600  13.41100   0.700   16
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