[Chimera-users] Amber-style mol2 name

Elaine Meng meng at cgl.ucsf.edu
Wed Oct 24 15:00:47 PDT 2012

Sorry, there is no option in Chimera to rename your atoms with Amber names. Looks like the PDB2PQR server might be able to do it:


I haven't tried it, though.  If it works, you could read the resulting PQR into Chimera and then write Mol2.

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