[Chimera-users] Amber-style mol2 name

[Elaine Meng]

Sorry, there is no option in Chimera to rename your atoms with Amber names. Looks like the PDB2PQR server might be able to do it:

<http://nbcr-222.ucsd.edu/pdb2pqr_1.8/>

I haven't tried it, though.  If it works, you could read the resulting PQR into Chimera and then write Mol2.
Elaine