[Chimera-users] using modeller through chimera

Taufiq Rahman mtur2 at cam.ac.uk
Mon Oct 8 08:13:44 PDT 2012

many thanks Elaine.

On Oct 8 2012, Elaine Meng wrote:

>On Oct 8, 2012, at 2:21 AM, Taufiq Rahman wrote:
>> Just wonder whether in using modeller through Chimera interface, we can 
>> use our own alignment file or not.
> Hi Taufiq, Yes, you can definitely use your own alignment file -- just 
> open it in Chimera. To run Modeller using the Chimera interface, all you 
> need is a sequence alignment of target and template (and if it has 
> additional sequences, that is fine) plus the template structure, both 
> opened in Chimera. There are several ways of obtaining these inputs, 
> outlined here:
> <http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/multalignviewer/multalignviewer.html#approaches>
> See the third one, "using a pre-existing target-template sequence 
> alignment" Regards, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer 
> Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical 
> Chemistry University of California, San Francisco

Taufiq Rahman
MSc(Manchester), PhD (Cantab)
Royal Society University Research Fellow
University of Cambridge

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