[Chimera-users] APBS interface in Chimera

Boaz Shaanan bshaanan at exchange.bgu.ac.il
Mon Oct 8 10:01:03 PDT 2012

Hi Elaine,

 Thanks a lot. I'll give a try soon.



Boaz Shaanan, Ph.D.
Dept. of Life Sciences
Ben-Gurion University of the Negev
Beer-Sheva 84105

E-mail: bshaanan at bgu.ac.il
Phone: 972-8-647-2220  Skype: boaz.shaanan
Fax:   972-8-647-2992 or 972-8-646-1710

From: Elaine Meng [meng at cgl.ucsf.edu]
Sent: Monday, October 08, 2012 6:34 PM
To: בעז שאנן
Cc: chimera-users at cgl.ucsf.edu; Baker, Nathan
Subject: Re: [Chimera-users] APBS interface in Chimera

Hi Boaz,
It is brand new, so you have not at all been negligent!   I only documented it a few days ago.

Currently it does not have the option to use a locally installed APBS -- it uses an APBS web service provided by the National Biomedical Computation Resource.
Elaine C. Meng, Ph.D.
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Oct 8, 2012, at 9:24 AM, Boaz Shaanan wrote:

> Hi,
> Totally due to my negligence I've only just discovered the long sought APBS interface in the daily build (the one I'm using is from 25/9). Well done Chimera and APBS teams!
> Practical question: I don't see on the APBS pull-down menu where I define the location of the executable (I'm talking about the Windows version right now, soon I'll try the linux version too). Is it clever enough to find it wherever APBS is installed or have I missed something?
>    Cheers,
>             Boaz

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