[Chimera-users] AMBER ff99SB Documentation

Elaine Meng meng at cgl.ucsf.edu
Sat May 12 16:35:45 PDT 2012

Hi Nikolay,
Try the Amber web site and/or manuals.  Google and Pubmed may also be useful.

There is some information in the Add Charge manual page of the Chimera User's Guide,

... but be aware that minimization in Chimera always uses ff99 for all parameters other than the charges, as mentioned here:
... because that is what the MMTK package used by Chimera provides.

Elaine C. Meng, Ph.D.                       
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On May 12, 2012, at 4:08 PM, Nikolay Igorovich Rodionov wrote:

> Hi all,
> Could someone point in the direction of some good  documentation on ff99SB, how it functions, and what calculations it performs?
> Thank you,
> Nikolay Rodionov

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