[Chimera-users] RMSD plot
pett at cgl.ucsf.edu
Fri Mar 23 13:16:08 PDT 2012
On Mar 22, 2012, at 8:16 PM, lecan wrote:
> Hi everybody.
> I am interested in plotting RMSD values vs time from molecular
> dynamics. Is there a way to extract the RMSD values from a the RMSD
> map in the analysis tool of MD movie. Or maybe exists another way to
> do this with Chimera.
Chimera cannot do a linear plot of RMSD values, though it's certainly
something I'd like to add to MD Movie's plotting capabilities when I
You can very easily extract the RMSD values from the RMSD map. Just
use the "Save RMSDs" button at the bottom of the map dialog to save
the values to a file.
UCSF Computer Graphics Lab
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