[Chimera-users] Clustering docking results using "headless" Chimera

Hurt, Darrell (NIH/NIAID) [E] darrellh at niaid.nih.gov
Tue Jun 26 19:57:23 PDT 2012

Hi there,

I want to use Chimera on a server (or in an automated fashion by command line; "-nogui") to read in a bunch (1000s) of PDB structures (each having an identical number of atoms) and then do clustering using the NMRCLUST code that you've so conveniently adapted.

I found this old thread:

Is this still the preferred method for doing what I'm hoping?

Also, is it possible to do a MatchMaker alignment before the clustering?


Darrell Hurt, Ph.D.
Section Head, Computational Biology
Bioinformatics and Computational Biosciences Branch (BCBB)

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