[Chimera-users] Electrostatic potential

[Thomas Evangelidis]

Hi Francesca,

There is a web service for PDB2PQR and APBS, so there is no need to install
them.

http://kryptonite.nbcr.net/pdb2pqr/

http://ws.nbcr.net/opal2/CreateSubmissionForm.do?serviceURL=http://localhost:8080/opal2/services%2FApbsParallelOpalService


Thomas

On 26 June 2012 16:48, <cantini at cerm.unifi.it> wrote:

>
> Regarding these programs
> Do you know how they worked and which are the best? I tried to installed
> them but without success .
>
> Francesca
>
> sette at uniroma2.it ha scritto:
>
>
>>
>> Chimera don't make calculations of electrostatic potential.
>> You can use other softwares for this, like APBS or Delphi.
>>
>> Marco
>>
>>
>> George Tzotzos <gtzotzos at me.com> ha scritto:
>>
>>  Hi everybody,
>>>
>>> Assuming that one knows the precise residues constituting a binding
>>> site, it is possible to calculate the electrostatic potential of these
>>> residues only? If yes, how?
>>>
>>> Thanks for any advice
>>>
>>> George
>>> ______________________________**_________________
>>> Chimera-users mailing list
>>> Chimera-users at cgl.ucsf.edu
>>> http://plato.cgl.ucsf.edu/**mailman/listinfo/chimera-users<http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users>
>>>
>>>
>>
>>
>> Dr.Marco Sette, Ph.D.
>>
>> Department of Chemical Sciences and Technology
>> University of Rome, "Tor Vergata"
>> via della Ricerca Scientifica, 00133, Rome, Italy
>> e-mail:        sette at uniroma2.it
>> e-mail:        m77it at yahoo.it
>> Tel.:          +39-0672594424
>> Fax:           +39-0672594328
>>
>> www.rete29aprile.it
>>
>>
>> ------------------------------**------------------------------**----
>> Invito da parte dell'Ateneo:
>> Il tuo futuro e quello della Ricerca Scientifica hanno bisogno del
>> tuo aiuto. Dona il  5 x mille all'Universita' di Roma Tor Vergata
>> codice fiscale: 80213750583 http://5x1000.uniroma2.it
>>
>>
>> ______________________________**_________________
>> Chimera-users mailing list
>> Chimera-users at cgl.ucsf.edu
>> http://plato.cgl.ucsf.edu/**mailman/listinfo/chimera-users<http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users>
>>
>>
>
>
> ------------------------------**------------------------------**----
> This message was sent using IMP, the Internet Messaging Program.
>
> ______________________________**_________________
> Chimera-users mailing list
> Chimera-users at cgl.ucsf.edu
> http://plato.cgl.ucsf.edu/**mailman/listinfo/chimera-users<http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users>
>



-- 

======================================================================

Thomas Evangelidis

PhD student

Biomedical Research Foundation, Academy of Athens

4 Soranou Ephessiou , 115 27 Athens, Greece

email: tevang at bioacademy.gr

          tevang3 at gmail.com


website: https://sites.google.com/site/thomasevangelidishomepage/
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20120626/b41982db/attachment.html>