[Chimera-users] pH based conformational change

Elaine Meng meng at cgl.ucsf.edu
Fri Jun 1 08:11:45 PDT 2012

Hi Nikolay,
No, sorry, there is nothing like that in Chimera.  Sounds like you would need to use molecular simulation software (Amber, Gromacs, many others).  Maybe you can ask on CCL.net if you want more advice, or on the email lists for specific simulation packages -- best,
Elaine C. Meng, Ph.D.                       
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On May 31, 2012, at 8:24 PM, Nikolay Igorovich Rodionov wrote:

> Hi all,
> Is there any way in Chimera to model protein denaturation across various pH values?
> Thanks
> Nikolay Rodionv

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