[Chimera-users] Doubt regarding cryeom map density threshold setting

rakesh ramachandram korenpol3 at gmail.com
Tue Jul 24 09:05:29 PDT 2012


    I want to know how to color the cryoem map according to the local
resolution and also according to the local cross correlation of the pdb
structure with the map.

   Moreover I am unable to connect to the internet in chimera inspite of
providing the proxy address and port, how should I give the user name and
password for authentication to connect inside chimera since I get
authentication error.


On 7 July 2012 03:48, Tom Goddard <goddard at sonic.net> wrote:

>  You can choose a map contour so it encloses the expected number of cubic
> Angstroms as described here:
> http://www.cgl.ucsf.edu/chimera/data/tutorials/eman07/chimera-eman-2007.html#part2
>   Tom
>  Hello,
>      My name is Rakesh. I would like to know how to set the density
> threshold according to the molecular mass of the protein in the cryoem map.
> I would also like to know how to calculate the molecular mass of a
> particular segment after segmentation in cryoem map.
> Regards
> Rakesh Ramachandran
> PhD Student
> Molecular Biophysics Unit,
> Indian Institute of Science,
> Bangalore - 560012
> India
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