[Chimera-users] Regarding Bonding Pattern and all residue

[Elaine Meng]

Dear Vivek,
In general, you could use the FindHBond and Find Clashes/Contacts tools (or their command equivalents).

<http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/findhbond/findhbond.html>
<http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/findclash/findclash.html>

For example, see this tutorial:
<http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/squalene.html>

There are several additional tutorials that may be useful for learning how to use Chimera:
<http://www.cgl.ucsf.edu/Outreach/Tutorials/GettingStarted.html>
<http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/frametut.html>

Best,
Elaine
----------
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Jan 30, 2012, at 2:01 AM, Vivek Keshri wrote:

> Dear Sir / Madam, 
> 
> I Vivek Keshri writing from Uttar Pradesh India, I am opening docked PDB file in Chimera 1.5.3 and want to identify all residue of receptor and ligand which are involved in binding. 
> 
> Waiting for favorable response...
> 
> Yours Sincerely, 
> 
> Vivek Keshri