[Chimera-users] Electric field lines?

[Hurt, Darrell (NIH/NIAID) [E]]

Hi Tom,

This is fantastic! I noticed that you've even colored the lines by their potential. Excellent!

Thank you. I look forward to using it soon!

Darrell



Darrell Hurt, Ph.D.
Section Head, Computational Biology
Bioinformatics and Computational Biosciences Branch (BCBB)
OCICB/OSMO/OD/NIAID/NIH

31 Center Drive, Room 3B62B, MSC 2135
Bethesda, MD 20892-2135
Office  301-402-0095
Mobile 301-758-3559
http://bioinformatics.niaid.nih.gov (Within NIH)
http://exon.niaid.nih.gov (Public)

Disclaimer: The information in this e-mail and any of its attachments is confidential and may contain sensitive information. It should not be used by anyone who is not the original intended recipient. If you have received this e-mail in error please inform the sender and delete it from your mailbox or any other storage devices. National Institute of Allergy and Infectious Diseases shall not accept liability for any statements made that are sender's own and not expressly made on behalf of the NIAID by one of its representatives.

From: Tom Goddard <goddard at sonic.net<mailto:goddard at sonic.net>>
Date: Thursday, December 13, 2012 1:10 AM
To: Darrell Hurt <darrellh at niaid.nih.gov<mailto:darrellh at niaid.nih.gov>>
Cc: "chimera-users at cgl.ucsf.edu<mailto:chimera-users at cgl.ucsf.edu> List" <chimera-users at cgl.ucsf.edu<mailto:chimera-users at cgl.ucsf.edu>>
Subject: Re: [Chimera-users] Electric field lines?

Hi Darrell,

  I made a Python Chimera script to show electrostatic field lines using a potential map.  I've attached an example picture.  Didn't have time today to put this into the Chimera daily build.

Tom


[cid:AC7D498F-1D49-49C8-9E7E-91C336C2F0D0]


On Dec 12, 2012, at 12:08 PM, "Hurt, Darrell (NIH/NIAID) [E]" <darrellh at niaid.nih.gov<mailto:darrellh at niaid.nih.gov>> wrote:

Hi Chimera team,

Is it possible to visualize electric field lines in Chimera from, for example, an APBS run? If so, how do I do it? I've scanned through the documentation, but didn't find anything…

Thanks,
Darrell

-------------- next part --------------
A non-text attachment was scrubbed...
Name: fieldlines_2sod.jpg
Type: image/jpg
Size: 117761 bytes
Desc: fieldlines_2sod.jpg
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20121213/c11677ad/attachment.jpg>