[Chimera-users] SASA vs. MSA

Nikolay Igorovich Rodionov nirodion at syr.edu
Sun Aug 5 09:48:20 PDT 2012

FYI, I used the same probe radius for both calculations and set the cut off to zero.

-----Original Message-----
From: Elaine Meng [mailto:meng at cgl.ucsf.edu] 
Sent: Sunday, August 05, 2012 12:43 PM
To: Nikolay Igorovich Rodionov
Cc: chimera-users at cgl.ucsf.edu BB
Subject: Re: [Chimera-users] SASA vs. MSA

On Aug 5, 2012, at 9:29 AM, Elaine Meng wrote:

> However, if you are looking at contributions to SES and SAS >N square angstroms where N>0, because the SAS is farther out from the atomic centers and thus larger in magnitude, that will select more atoms for SAS.

Actually it depends on the value of N. The statement above applies when N is reasonably large, ~15 square angstroms or greater.

More information about the Chimera-users mailing list