[Chimera-users] question regarding using molmap with symmetry option

jiwasa at gmail.com jiwasa at gmail.com
Wed Sep 14 11:24:24 PDT 2011


Aha! That works wonderfully. Thank you, Elaine!

Janet

On , Elaine Meng <meng at cgl.ucsf.edu> wrote:
> Hi Janet!

> It looks correct -- however, the molmap symmetry options were added after  
> the 1.5.3 release, so the issue is probably that you need to get a newer  
> version of Chimera (a daily build).

> http://plato.cgl.ucsf.edu/chimera/download.html#daily>



> Changes since last production release, 1.5.3:

> http://plato.cgl.ucsf.edu/chimera/docs/relnotes/snapshot.html>



> Best,

> Elaine

> -----

> Elaine C. Meng, Ph.D.

> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab

> Department of Pharmaceutical Chemistry

> University of California, San Francisco



> On Sep 14, 2011, at 8:20 AM, Janet Iwasa wrote:



> > Hello!

> > I've been working with some virus models, and was hoping to use molmap  
> with the symmetry option. The main reason I'm not using multiscale models  
> is so that I can create a single surface for several of the different  
> chains in the capsid. I've been having a little trouble getting this to  
> work, and I'm not sure if I'm doing it correctly:

> >

> > molmap :.AC 10 symmetry biomt

> >

> > Is this correct? Doing this gives me the error: "Keyword 'symmetry'  
> doesn't match any known keywords"

> >

> > Advice?

> > thanks,

> > Janet




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