[Chimera-users] MD plotting

Eric Pettersen pett at cgl.ucsf.edu
Tue Nov 1 16:08:40 PDT 2011

Hi all,
	For any of you using Chimera's MD Movie for trajectory playback, I  
just added the ability to plot atomic distances, angles, and dihedrals  
for your trajectory.  You can click (or drag) on the plot to go to the  
corresponding frame.  You create a plot by using the "Plot" submenu in  
MD Movie's Analysis menu.
	Most of the functionality is available in the current daily build,  
but tomorrow's build will have a couple of additional features:   
dumping plot values to a file, and showing the numeric value of the  
plot for the current frame in the list of plots (the value is blanked  
during playback since updating it slows down playback too much).
	Feedback welcome.


                         Eric Pettersen
                         UCSF Computer Graphics Lab

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