[Chimera-users] matchmaker output
pett at cgl.ucsf.edu
Fri Mar 18 10:34:40 PDT 2011
On Mar 18, 2011, at 9:39 AM, Tiziano Tuccinardi wrote:
> Thanks Eric!!
> It works very well!! Is it also possible to save the alignment file
> without omitting the all-gap columns?
I guess your question confuses me in two ways:
1) AFAIK, MatchMaker-generated alignments never have all-gap columns.
2) Although the MAV save dialog defaults to "omit all-gap columns",
the script I sent doesn't. I would have to add few more lines of code
to the script to get it to omit all-gap columns.
Maybe you were assuming it was omitting them when it wasn't?
UCSF Computer Graphics Lab
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