[Chimera-users] Manual placement of ligand into the receptor binding site

George Tzotzos gtzotzos at me.com
Mon Jun 20 08:03:07 PDT 2011

Hi everybody,

I'm trying to simulated ligand binding by molecular dynamics. I'd like to place a ligand into the binding site of a receptor molecule downloaded from the Protein Data Bank.

The ligand has not been co-crystalised with the protein and its coordinates do not match those of the protein. Is there a way that I can achieve a coordinate "translation" manually by using Chimera?

Thanks in advance for any suggestions



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