[Chimera-users] Contacts

George Tzotzos gtzotzos at me.com
Tue Jun 7 10:12:16 PDT 2011

Hi everybody,

I'm trying to analyse AMBER trajectories of protein/ligand complexes. The objective of my exercise is to find out contacts/interactions between the ligand and the receptor in the course of the trajectory.

Is there a way of doing this DIRECTLY in Chimera? Or one has to first perform clustering of structures and then work out clashes/contacts on the representative structures that are dumped from the trajectory.

Best regards


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