[Chimera-users] exporting the 2drms values

Conrad Huang conrad at cgl.ucsf.edu
Mon Jan 31 08:19:49 PST 2011


Please try out the latest daily build of Chimera.  The EnsembleMatch 
dialog should have a "Save..." button at the bottom, next to "Hide", 
that let's you save the RMSD matrix to a file.  (Unless you're on Linux, 
in which case you may have to wait until tomorrow, as our Linux build 
did not succeed last night.)

Conrad

On 1/29/11 2:09 AM, Bala subramanian wrote:
> Dear Conrad,
> Exactly, Yes i need a table like the following. Is there any way ?
>
> On Fri, Jan 28, 2011 at 8:00 PM, Conrad Huang <conrad at cgl.ucsf.edu
> <mailto:conrad at cgl.ucsf.edu>> wrote:
>
>     There is currently no way to extract that information since it is
>     only present in the graphical user interface.  In what format would
>     you like to save the data?  Is a table like the following acceptable?
>
>             #0.1    #0.2    #0.3    ...
>     #0.1    0.00    1.23    1.75    ...
>     #0.2    1.23    0.00    2.73    ...
>     ...
>
>     In particular, are the column/row titles okay?
>
>     Conrad
>
>
>     On 1/25/2011 8:10 AM, Bala subramanian wrote:
>
>         Friends,
>         I used Ensemble match command to calculate the 2rmsd of multiple pdb
>         files concatenated in a single pdb file. I would like to know if
>         there
>         is any way to save the values (as a matrix). Precisely how to
>         output the
>         ensemble match values.
>
>
>         Thanks,
>         Bala
>
>
>
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>



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