[Chimera-users] (no subject)

Fakron, Osama Mohamed osama.fakron100 at email.wsu.edu
Mon Aug 29 12:49:29 PDT 2011

Hi Elaine & Tom   

Thank  you  very  much  for  your  kind  response . May  I  have  an  appointment  with  you  , I  would  like  to  come  to  San Fransisco .

All  the  best  for   you 
From: Elaine Meng [meng at cgl.ucsf.edu]
Sent: Monday, August 29, 2011 10:42 AM
To: Fakron, Osama Mohamed
Cc: chimera-users at cgl.ucsf.edu
Subject: Re: [Chimera-users] (no subject)

Hi Osama,
You could try using the "Volume Tracer" tool (under Tools... Volume Data) to place marker spheres at the location of interest.

Use the Mouse menu on that tool to control how the markers are placed.

Then if you select a marker sphere with Ctrl-click and use command "getcrd sel" it will report the coordinates.  The coordinates should be in the same system as the volume, as long as you don't move the markers separately from the volume.

I hope this helps,
Elaine C. Meng, Ph.D.
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Aug 27, 2011, at 1:48 AM, Fakron, Osama Mohamed wrote:

> Hello
> My name is Osama M.Fakron , I am  PhD student  in Mechanical &Material School at Washington State  University , I am working on reconstruct  3D image  from SEM 2D images  by EM3D software ,I am  using  Chimera for  viewing my reconstructed images , I need some help  in  getting 3D position for  any point in  my  reconstructed  image , and also your supporting is appreciated.
> All the best for you
> Osama

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