[Chimera-users] XPLOR volumetric data not shown as a volume

matthias.gutmann at stfc.ac.uk matthias.gutmann at stfc.ac.uk
Thu Aug 18 03:31:59 PDT 2011


Dear all,

                having succeeded in writing an XPLOR data file and importing it into CHIMERA, I was expecting to see
a cube like volume. Instead, I'm only seeing a thin plane. Is this to be expected?

The header for the XPLOR file is as below:


       1
SXD2001reciprocal_space_volume
     301       0     300     301       0     300     301       0     300
    30.10000    30.10000    30.10000    90.00000    90.00000    90.00000
ZYX
       0
     0.57280     0.05125     0.25826     0.23192     0.47232     0.40565
     0.28667     0.06406     0.13678     0.22750     0.22332     0.11380
    -0.02432     0.32358     0.22395     0.06303     0.22736     0.27504
     0.30512     0.21062     0.26810     0.15033     0.25180     0.39434
     0.85280     0.25197     0.07160     0.22430     0.28253     0.11386
     0.34160     0.32177    -0.03150     0.22739     0.47072    -0.00241
     0.26013     0.20844     0.20823     0.30089     0.40608     0.23863
   -0.13479     0.28377     0.08277     0.25996     0.23550     0.09638

How can I get the entire volume to display as a volume rather than a single plane?

Is the XPLOR format not a good one to use for this purpose?

Many thanks and best wishes,

Matthias

----------------------------------------------------------------------------------------------
Matthias Gutmann                                          Instrument Scientist SXD
Rutherford Appleton Laboratory              Phone: +44 (0)1235 44 6397
ISIS Facility                                                          Fax: +44 (0)1235 44 5200
Chilton Didcot                                                    Office : R3, 1.28
Oxfordshire OX11 0QX                                   Email: Matthias.Gutmann at stfc.ac.uk
UNITED KINGDOM


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