[Chimera-users] ribbon problem

Francesco Oteri francesco.oteri at gmail.com
Thu Sep 23 11:05:17 PDT 2010

  I've attached the file
Il 23/09/2010 19:38, Eric Pettersen ha scritto:
> On Sep 23, 2010, at 6:33 AM, Francesco Oteri wrote:
>> Dear all,
>> I'd like to use chimera to do a picture of a circular DNA with ribbon
>> representation.
>> I found the two following problems:
>> 1.If I load the .pdb files, chimera is unable to recognize the topology
>> and shows extra-bond connecting the last base of a strand with the
>> previous of the other strand.
> I would need the PDB file in order to see exactly what you mean here, 
> and to fix the problem.
>> 2.If I load the AMBER topology, the connectivity is correctly
>> recognized, but the first base and last are not connected by  the ribbon.
> This problem is marked as "fixed" in our bug database, but some simple 
> testing shows that it is not.  I have reopened that entry and will add 
> you to the recipient list so that you will get notified when we fix it 
> (hopefully for real!) again.
> --Eric
> Eric Pettersen
> UCSF Computer Graphics Lab
> http://www.cgl.ucsf.edu

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20100923/142f3db3/attachment.html>
-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: frames2.pdb
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20100923/142f3db3/attachment.ksh>

More information about the Chimera-users mailing list