[Chimera-users] Closest Waters

[Beale, John]

I am working with a protein in explicit water. Using AMBER tools, I have selected the 100 closest water molecules in and around the protein. Is there a way in Chimera to identify which amino acid residues that the waters are hydrogen bonded to? Or, is there a way to visualize which amino acids the water molecules are closest to?

Thanks!


John M. Beale, Jr., Ph.D.
Professor of Medicinal Chemistry and Pharmacognosy
Saint Louis College of Pharmacy
4588 Parkview Place
Saint Louis, Missouri  63110
314-446-8461
Cell: 314-315-0409
FAX: 314-446-8460
jbeale at stlcop.edu<mailto:jbeale at stlcop.edu>

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20101129/69a1f187/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image001.jpg
Type: image/jpeg
Size: 10569 bytes
Desc: image001.jpg
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20101129/69a1f187/attachment.jpg>