[Chimera-users] Solvate RNA-protein Complex
pett at cgl.ucsf.edu
Wed May 12 13:27:34 PDT 2010
The Solvate tool has a bug in that if hydrogens are added during the
solvation work flow, then all hell breaks loose. If your structure
need hydrogens, then what you need to do is use the AddH tool to add
them and write the structure to a new PDB file. Using that PDB file
you should be able to use the Solvate tool successfully. Let me know
if that doesn't work.
UCSF Computer Graphics Lab
On May 12, 2010, at 11:28 AM, Andrew Tran wrote:
> Hi Chimera support,
> I am trying to analyze a protein-RNA complex and would like to
> neutralize the phosphate backbone with ions and solvate the complex.
> When I try to do this using Chimera (through AMBERtools?), the
> complex dissociates. Is there a way to add ions and solvate without
> dissociation of the complex?
> Andrew Tran
> Brown University
> Biochemistry and Molecular Biology
> Chimera-users mailing list
> Chimera-users at cgl.ucsf.edu
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