[Chimera-users] dock prep multiple models

[Eric Pettersen]

On Jun 14, 2010, at 10:48 AM, Francesco Pietra wrote:

> With the combined pdb file,  does dockprep operate on single molecules
> one after the other, so that it will not encounter obstacles even for
> many (more complex) ligands?

I think this will be okay.  Chimera ignores sibling submodels (e.g.  
#0.2 is a "sibling" of #0.1) when adding hydrogens so you will be okay  
if all your ligands come from one file.

--Eric

                         Eric Pettersen
                         UCSF Computer Graphics Lab
                         http://www.cgl.ucsf.edu


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