[Chimera-users] More on extracting data from the reply log

[Eric Pettersen]

On Jul 17, 2010, at 6:33 AM, Jean Didier Pie Marechal wrote:

> Hi everyone,
>
> I want to write  only a part of the reply log in a file. I was  
> trying to use the script you gave to katrina months ago but I have a  
> problem in parsing the reply log text output.
> If I understand correctly the reply log text is a raw text. I'd like  
> to parse it in "lines" and then only write in the output file a  
> intersting bit, like for example lines that contains "RMSD". I  
> thought it would be enough to split text using the '\n' return  
> character but that does not work. Could you give me a hand please?
>
> Best
>
> JD
>
> def save_reply_log(path):
>   from chimera import dialogs
>   r = dialogs.find('reply')
>   text = r.text.get('1.0', 'end')
>   f= open(path, 'w')
>   i=text.split("\n")
>   f.close()
>
> save_reply_log("d:/tmplog.txt")

Hi JD,
	I think your function would be written as:

def save_reply_log(path):
	from chimera import dialogs
	r = dialogs.find('reply')
	text = r.text.get('1.0', 'end')
	f = open(path, 'w')
	for line in text.splitlines():
		if "RMSD" in line:
			print>>f, line
	f.close()

--Eric


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