[Chimera-users] File conversion: strange behaviour

[George Tzotzos]

Hi everybody,

I'm attaching a  pdb file <3og.pdb>. This file on conversion from amber11 (ANTECHAMBER) yields 3og.mol2 which Chimera renders as per snapshot below. The two big blue spheres should be oxygen atoms. Selecting the molecule and trying to colour by atom has no effect other than colouring the atoms that are adjacent to the blue spheres.

Any explanation for this behaviour?

Many thanks and best regards

George
-------------- next part --------------
A non-text attachment was scrubbed...
Name: 3og.pdb
Type: chemical/x-pdb
Size: 5458 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20101222/840ae474/attachment.bin>
-------------- next part --------------

-------------- next part --------------
A non-text attachment was scrubbed...
Name: PastedGraphic-1.tiff
Type: image/tiff
Size: 105138 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20101222/840ae474/attachment.tiff>