[Chimera-users] Using per-frame scripts with color by attribute/bfactor

Andrew M. Simms amsimms at u.washington.edu
Tue Mar 24 11:15:25 PDT 2009

I am making some MD movies using the multiple-pdb file format.  I am using
coloring by attribute, in this case overriding the "bfactor" attribute for
my own purposes.  The nature of my analysis is such that the bfactor can
change from frame to frame.  I use this command in the per-frame script:


rangecolor bfactor,a min white max green


However, when I try to make a movie, it appears that the bfactor attribute
changes are not reflected in the animation.  If I look at generated
structures individually they are fine.


Is there something special I need to specify in per-frame script?





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