[Chimera-users] marker coordinates

Thomas Goddard goddard at cgl.ucsf.edu
Mon Jan 26 14:38:27 PST 2009

Hi Gabor,

   Not sure what you are talking about in the subregion selection panel 
that has disappeared.  Sounds like what you want is the "atom box" panel 
as Elaine mentioned.  Once you use Atom Box, then use volume dialog File 
/ Save Map As....

   If you are refering to the subregion panel Resample button.  That is 
now down by the "Crop" button if you have the "Rotate selection box" 
checkbutton enabled.


Gabor Papai wrote:
> Hi,
> I would like to do the following: I placed markers on density spots. I 
> want to get their coordinates and excise a box around the marked density 
> and save it as a separate file. For this I would like to know how I can 
> retrieve the coordinates of a marker set and possibly how to position 
> exactly a box around a  marker to set a subregion (and of course how to 
> set the dimensions of that box). This second feature existed before, but 
> disappeared in the latest releases with the subregion selection tool in 
> the Volume Viewer.
> Thanks in advance,
> Gabor

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