[Chimera-users] Sequence vs Sequence plot using minrms....

Elaine Meng meng at cgl.ucsf.edu
Tue Feb 24 10:02:28 PST 2009

Hi Sergio,
That sequence vs. sequence plot was shown in the older tool AlignPlot,  
but is not included in the newer tool Minrms Plot.

AlignPlot was removed a very long time ago, sometime between Dec 2004  
and Oct 2005.  You can get the Dec 2004 and older releases of Chimera  

There have been many improvements and new features since then, so I  
recommend just naming the old version differently and/or putting it in  
a different place so that you can also have a current version of  
Chimera on your computer.

I tried using the AlignPlot extension with a new version of Chimera,  
but that was unsuccessful (generated errors and did not work well).   
Elaine C. Meng, Ph.D.                          meng at cgl.ucsf.edu
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Feb 24, 2009, at 9:21 AM, Sergio Garay wrote:

> Hi all
> I run minrms with defaults values on my two proteins and I was able  
> to obtain many useful alignments. But when I
> load the results on chimera, it doesn´t show me the sequence vs  
> sequence plot. Is there any particular way to do that?
> Or there is any special minrms command (option) to obtain this?
> All the other plot were right (rms vs sequece and the alignment plot).
> Any help will be appreciated.

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