[Chimera-users] 1HLA- how to make ribbon image?
meng at cgl.ucsf.edu
Tue Sep 30 10:31:10 PDT 2008
To summarize for the chimera-users list:
1HLA is an alpha-carbon-only structure, which cannot be shown as a
ribbon in Chimera.
However, there are many other structures of this protein, several at
higher resolution and including all backbone atoms, allowing them to
be displayed as ribbons. This Uniprot page has a long list of
structures (about 80% of the way down is a "3d structure databases"
The best resolution looks like 1.4 Angstroms, structures 1i4f and
1oga. Both match up with the CA-trace in 1hla quite well. Since they
include all backbone atoms, they can be displayed as ribbons. I
suggest using 1i4f. 1oga is just as good but has two copies.
I hope this helps,
Elaine C. Meng, Ph.D. meng at cgl.ucsf.edu
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
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