[Chimera-users] Contact mapping

Eric Pettersen pett at cgl.ucsf.edu
Thu Oct 16 10:48:27 PDT 2008

On Oct 16, 2008, at 10:31 AM, Beale, John wrote:

> Is there a way in Chimera to generate interresidue contact maps for  
> proteins from MD data?

No, sorry.  The closest you can get I think is to run findclash every  
frame and write out a list of contacts, which doesn't seem very good.   
VMD has a plugin that does exactly what you're asking for though:
Contact Map Plugin, Version 1.1


                         Eric Pettersen
                         UCSF Computer Graphics Lab

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