[Chimera-users] building linker peptide

Fabian Gmail fabian.glaser at gmail.com
Sun May 18 04:20:07 PDT 2008

Dear Chimera experts,

I am willing to build a peptide "linker" connecting two different pdb 
chains, that is to connect two existing pdb chains with a new peptide 
chain, and if possible minimize it. Is it possible to do that wich 
chimera? I know the command addaa, but to my best understanding this 
command it's not able to connect the end of the new peptide with the 
beginning of the second chain.

Any suggestions will be greatly appreciated.

Best regards and thanks a lot in advance,


Fabian Glaser, PhD

Bioinformatics Knowledge Unit,
The Lorry I. Lokey Interdisciplinary
Center for Life Sciences and Engineering
Technion - Israel Institute of Technology
Haifa 32000, ISRAEL

Web:   http://bku.technion.ac.il
Email: fglaser at tx.technion.ac.il
Tel:   +972-(0)4-8293701
Cel:   +972-(0)54-4772396

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