[Chimera-users] automated rebuilding of side chains?

Ian Yarbrough yarbian at gmail.com
Thu May 1 22:08:55 PDT 2008


A model that I am working with has several missing or partial side chains,
and I'm dealing with about 80 subunits of this protein (organized into 3
chains).  I am trying to repair these, but don't want to go through the task
of finding every broken chain.  Is there a way to get chimera to locate the
broken ones and repair them all?  I've seen the dock prep feature, but don't
want to change them all to alanines.

Thanks for you help.

Ian Yarbrough
Texas A&M University
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