[Chimera-users] Swapaa from Java Runtime.exec

[Eric Pettersen]

If you run Chimera in nogui mode (i.e. with the command-line flag "-- 
nogui") with no script file argument then standard input would be  
interpreted as Chimera commands.  Alternatively, you could supply a  
script file (Chimera commands or Python) as an argument.  This is  
basically described here:

http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/options.html#nogui

You could use a series of commands like:

open input.pdb
swapaa TYR :15.a
write output.pdb

to do the swapaa.

--Eric

                         Eric Pettersen
                         UCSF Computer Graphics Lab
                         http://www.cgl.ucsf.edu


On Jun 9, 2008, at 1:14 PM, ProtEUS wrote:

> Hello all!
>
> I am sorry if this is a dump question, but is it possible for  
> swapaa to run fromJava server with Runtime.exec()?
>
> Thank you very much!!
>
> Andreas, Greece.
> _______________________________________________
> Chimera-users mailing list
> Chimera-users at cgl.ucsf.edu
> http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users

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