[Chimera-users] list of atoms attributes

[Jean-Didier Maréchal]

Hi again,

When using the python shell, I am often struggling to find the
attribute for the atoms I work on. 
for at my list with the selected atoms, I caught that at[i].name gives
the atom name of the entry at[i], at[i].residue provides with the name
residue.chain, etc. 

Where can I find in the programmer's guide the full list of available
attributes? What would be the way to ask for the serialNumber from the
IDLE?

Thanks lot
JD


On Thu, 2008-02-21 at 12:00 -0800, chimera-users-request at cgl.ucsf.edu
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> Today's Topics:
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>    1. Re: distance (Elaine Meng)
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> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Thu, 21 Feb 2008 09:00:37 -0800
> From: Elaine Meng <meng at cgl.ucsf.edu>
> Subject: Re: [Chimera-users] distance
> To: "??" <lynnwuchao at gmail.com>
> Cc: chimera-users at cgl.ucsf.edu
> Message-ID: <0E85C396-8C7D-4182-A029-5C0155245C3A at cgl.ucsf.edu>
> Content-Type: text/plain; charset=UTF-8; delsp=yes; format=flowed
> 
> Hi!
> 
> The distances are listed in a separate dialog - choose "Tools...  
> Structure Analysis... Distances" from the menu to open that dialog.   
> You can adjust the number of decimal places in the measurement, and  
> there is a "Save" button if you want to save distances or other  
> measurements to a text file.
> 
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.                          meng at cgl.ucsf.edu
> UCSF Computer Graphics Lab and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>                       http://www.cgl.ucsf.edu/home/meng/index.html
> 
> 
> 
> 
> On Feb 20, 2008, at 11:38 PM, ?? wrote:
> 
> > Hi, folks,
> > I select two atoms and measured their distance using the command  
> > distance and can see the exact distance value in the graphic  
> > interface, but when I go the log file i can not find it.
> > Can anybody give me a hand  and tell me why can I find it? Thanks..
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