[Chimera-users] Loading prmtop/mdcrd with partial workout

Francesco Pietra chiendarret at yahoo.com
Fri Feb 1 12:49:22 PST 2008

I am experiencing difficulties with Amber ptraj in removing solvent/lipid/box
(i.e., unexpected problems of prmtop fitting after that, though I used a prmtop
before creating solvent/lipid/box).

Otherwise, I have memory problems with Chimera in loading such an extensive MD
(many ns, in various coordinate files) with all the burden of

My question: is that feasible with Chimera to load a coordinate file, remove
solvent and lipid, load a second coordinate file, remove solvent and lipid, and
so on for all coordinate files?


francesco pietra

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