[Chimera-users] correlation plot

Eric Pettersen pett at cgl.ucsf.edu
Fri Apr 25 13:12:58 PDT 2008

On Apr 25, 2008, at 7:32 AM, bala wrote:

> Dear chimera friends,
> I have a simulated trajectory of a RNA molecule. I want to make a  
> correlation plot based on residue fluctuation. I am new to  
> scritping in python. Can anybody please give me some suggestions or  
> any sample script for such analysis if possible.

Hi Bala,
	Is there any particular reason you want to do it in Chimera?  It  
seems that Simulaid (http://atlas.physbio.mssm.edu/~mezei/simulaid/)  
can do the plotting you're asking about, and it's free to academics.
	If there is a particular reason you want to use Chimera, I can  
provide the programming details related to reading/processing a  
trajectory.  In that case it would be helpful if you could say what  
format your RNA trajectory is in.


                         Eric Pettersen
                         UCSF Computer Graphics Lab

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