[Chimera-users] (no subject)

Wang, Xuelin Xuelin.Wang at STJUDE.ORG
Wed Sep 5 10:37:00 PDT 2007

Dear Chimera's users:


I have a problem to make an Amber MD movie using Chimera. I am sure I
used the right Amber top file and mdcrd file, since I can use VMD to
display them. In my trajectory file, I already striped water and
counter-ions. Only box information was left with trajectory. However,
when I display trajectory, all trajectories were out of shape. I saw the
similar thing when I used VMD to display the trajectory without
including PBC option. I doubt that there is something wrong with box
information. But I don't know how to fix it. Any ideas?




-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20070905/c02e942b/attachment.html>

More information about the Chimera-users mailing list