[Chimera-users] Detecting residue from command line
meng at cgl.ucsf.edu
Fri Nov 30 10:42:10 PST 2007
In the command line, ":" means residue number and the following "."
indicates the chain ID. You could select the residues with
if they are in the "water" chain, or use that same specification in
many other commands, for example
color hot pink :0-521.water
Probably the most tricky thing is that :0-521 without specified chain
ID would include residues in any chains with single-character IDs
(A,B,C ...) but not the special chains "water" and "het"
Details on command-line atom specifications:
Elaine C. Meng, Ph.D. meng at cgl.ucsf.edu
UCSF Computer Graphics Lab and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
On Nov 30, 2007, at 9:51 AM, Francesco Pietra wrote:
> Sorry for a question that was surely answered many times.
> How to detect on the screen (from command line) residues from their
> number?. I have two different sets of WAT: 522-9999 and 0-4759 and
> want to
> check where 0-521 are located in a protein-ligand-POPC membrane.
> francesco pietra
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