[Chimera-users] Ramachandran Plots

Eric Pettersen pett at cgl.ucsf.edu
Fri Nov 16 10:32:37 PST 2007

This and other types of important types of MD analysis are are my to- 
do list, but I really don't have a good idea as to when I'll have  
time to implement them.  Until then, as Eric Dawson mentioned in his  
reply, MDdisplay offers this capability.


                         Eric Pettersen
                         UCSF Computer Graphics Lab

On Nov 15, 2007, at 8:53 PM, Quinton Dowling wrote:

> Hi,
> I am interested in creating a ramachandran plot from an md trajectory.
>  Particularly I would like to track the change in phi/psi angles over
> time for specific amino acids throughout the md in a fashion that is
> easily presentable.  Is there a way to do this with Chimera?  Or any
> way at all?  Thanks a bunch.
> Quinton Dowling
> Research Computing Center
> The College of Idaho
> Caldwell ID 83605
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> Chimera-users at cgl.ucsf.edu
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