[Chimera-users] Z-slice transparency

Thomas Goddard goddard at cgl.ucsf.edu
Mon Nov 5 16:40:09 PST 2007

Hi Lu,

   You can make Chimera plane display opaque.  The degree of 
transparency and brightness are given by the height of the yellow curve 
on the volume dialog histogram -- at the top of the histogram is 
completely opaque, and at the bottom is completely transparent.  So make 
the yellow line be entirely at the top of the histogram and set the 
color of the low (noise) data value nodes in the yellow curve to black.

   The latest Chimera daily builds have the plane display feature built 
into the volume dialog.



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