[Chimera-users] Reading Frames

Mark Cunningham Mark_Cunningham at berea.edu
Fri Jun 9 16:12:44 PDT 2006

Hopefully someone can please respond to this before the weekend. 
I have Windows version of Chimera. I am using Chimera to run rmsd between observed ligands and GOLD calculated ligands. When I open both ligands ( with .mol2 format) with Chimera, they load in different reading frames, thus I can't make the rmds calculation. Please address this issue.  The rmsd works fine otherwise, its just with the GOLD ligand files that I am getting the reading frame problems.
Thanks very much.
Mark A. Cunningham, Ph.D.
Assistant Professor of Chemistry
CPO 2191
Berea College
Berea, KY 40404
(859)985-3029 Office
(859)985-3303 Fax

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