[Chimera-users] matchmaker command

Elaine Meng meng at cgl.ucsf.edu
Mon Jul 10 16:23:45 PDT 2006


I accidentally provided a link to the Multalign Viewer man page  
instead of the one for MatchMaker, but what I said is accurate; the  
description of matching is essentially the same in those two places.   
Here are the more appropriate MatchMaker links:

http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/mmaker.html    
(command)
http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/matchmaker/ 
matchmaker.html   (GUI)


On Jul 10, 2006, at 4:13 PM, Elaine Meng wrote:

> The superposition is a least-squares fit of the alpha-carbons of the
> residue pairs aligned in the sequence alignment:
> http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/ 
> multalignviewer/multalignviewer.html#superposition




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