[Chimera-users] new version available

[Greg Couch]

There are lots of special requirements for building chimera.  A lot of the 
work we do is to get chimera running on a variety of platforms.  For 
instance, the Linux chimera is built on Red Hat 7.1 using gcc 3.3.3.  We 
build on an ancient version of Linux so chimera will run on most, if not 
all, of the current versions of Linux.  I've attached the pyconfig.h file 
from our Linux build, which is probably different than the 
chimera/include/python2.4/pyconfig.h that you have.   For compiler flags, 
we always pass in "-ansi -pthread -fPIC -malign-double" to gcc.

 	- Greg

On Tue, 25 Oct 2005, Charlie Moad wrote:

> Date: Tue, 25 Oct 2005 11:55:55 -0500
> From: Charlie Moad <cwmoad at gmail.com>
> To: Thomas Goddard <goddard at cgl.ucsf.edu>
> Cc: chimera-users at cgl.ucsf.edu
> Subject: Re: [Chimera-users] new version available
> 
> Thanks for posting these.  Unfortunately I am hitting a weird error on
> any cpython module I try to build.
>
> In file included from /usr/local/chimera/include/python2.4/Python.h:55,
> /usr/local/chimera/include/python2.4/pyport.h:612:2: error: #error
> "LONG_BIT definition appears wrong for platform (bad gcc/glibc
> config?)."
> error: command 'gcc' failed with exit status 1
>
> There a lot of google hits referencing this error, but nothing recent
> or helpful.  For some reason the architecture is incorrectly
> identified as 64-bit.  I should note that the stock python does not
> generate this error.  Are there any special requirements for build
> with chimera?
>
> - Charlie
>
> On 10/24/05, Thomas Goddard <goddard at cgl.ucsf.edu> wrote:
>> Hi Charlie,
>>
>>   You're right, the header files I pointed you to in the previous email only
>> inluded Chimera headers, not Python headers.  Sorry about that.
>>
>>   Here are the Chimera 2181 (same as 2180) headers for Chimera and Python.
>>
>>         https://www.cgl.ucsf.edu/cgi-bin/chimera-get.py?file=source/chimera-1.2181-headers.tar.gz
>>
>> These will be shown on the Chimera source code page
>>
>>         http://www.cgl.ucsf.edu/chimera/sourcecode.html
>>
>> when our web pages are updated tonight.
>>
>>         Tom
>>
>
> _______________________________________________
> Chimera-users mailing list
> Chimera-users at cgl.ucsf.edu
> http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users
>
-------------- next part --------------
/* pyconfig.h.  Generated by configure.  */
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/* The size of a `short', as computed by sizeof. */
#define SIZEOF_SHORT 2

/* The number of bytes in a time_t. */
#define SIZEOF_TIME_T 4

/* The size of a `uintptr_t', as computed by sizeof. */
/* #undef SIZEOF_UINTPTR_T */

/* The size of a `void *', as computed by sizeof. */
#define SIZEOF_VOID_P 4

/* The size of a `wchar_t', as computed by sizeof. */
#define SIZEOF_WCHAR_T 4

/* Define to 1 if you have the ANSI C header files. */
#define STDC_HEADERS 1

/* Define if you can safely include both <sys/select.h> and <sys/time.h>
   (which you can't on SCO ODT 3.0). */
#define SYS_SELECT_WITH_SYS_TIME 1

/* Define to 1 if you can safely include both <sys/time.h> and <time.h>. */
#define TIME_WITH_SYS_TIME 1

/* Define to 1 if your <sys/time.h> declares `struct tm'. */
/* #undef TM_IN_SYS_TIME */

/* Define if you want to use MacPython modules on MacOSX in unix-Python. */
/* #undef USE_TOOLBOX_OBJECT_GLUE */

/* Define if a va_list is an array of some kind */
/* #undef VA_LIST_IS_ARRAY */

/* Define if you want SIGFPE handled (see Include/pyfpe.h). */
/* #undef WANT_SIGFPE_HANDLER */

/* Define if you want wctype.h functions to be used instead of the one
   supplied by Python itself. (see Include/unicodectype.h). */
/* #undef WANT_WCTYPE_FUNCTIONS */

/* Define if WINDOW in curses.h offers a field _flags. */
#define WINDOW_HAS_FLAGS 1

/* Define if you want documentation strings in extension modules */
#define WITH_DOC_STRINGS 1

/* Define if you want to use the new-style (Openstep, Rhapsody, MacOS) dynamic
   linker (dyld) instead of the old-style (NextStep) dynamic linker (rld).
   Dyld is necessary to support frameworks. */
/* #undef WITH_DYLD */

/* Define to 1 if libintl is needed for locale functions. */
/* #undef WITH_LIBINTL */

/* Define if you want to produce an OpenStep/Rhapsody framework (shared
   library plus accessory files). */
/* #undef WITH_NEXT_FRAMEWORK */

/* Define if you want to compile in Python-specific mallocs */
#define WITH_PYMALLOC 1

/* Define if you want to compile in rudimentary thread support */
#define WITH_THREAD 1

/* Define to profile with the Pentium timestamp counter */
/* #undef WITH_TSC */

/* Define to 1 if your processor stores words with the most significant byte
   first (like Motorola and SPARC, unlike Intel and VAX). */
/* #undef WORDS_BIGENDIAN */

/* Define to 1 if on AIX 3.
   System headers sometimes define this.
   We just want to avoid a redefinition error message.  */
#ifndef _ALL_SOURCE
/* # undef _ALL_SOURCE */
#endif

/* Define on Irix to enable u_int */
#define _BSD_TYPES 1

/* This must be set to 64 on some systems to enable large file support. */
#define _FILE_OFFSET_BITS 64

/* Define on Linux to activate all library features */
#define _GNU_SOURCE 1

/* This must be defined on some systems to enable large file support. */
#define _LARGEFILE_SOURCE 1

/* Define on NetBSD to activate all library features */
#define _NETBSD_SOURCE 1

/* Define _OSF_SOURCE to get the makedev macro. */
/* #undef _OSF_SOURCE */

/* Define to activate features from IEEE Stds 1003.1-2001 */
#define _POSIX_C_SOURCE 200112L

/* Define if you have POSIX threads, and your system does not define that. */
/* #undef _POSIX_THREADS */

/* Define to force use of thread-safe errno, h_errno, and other functions */
#define _REENTRANT 1

/* Define to the level of X/Open that your system supports */
#define _XOPEN_SOURCE 600

/* Define to activate Unix95-and-earlier features */
#define _XOPEN_SOURCE_EXTENDED 1

/* Define on FreeBSD to activate all library features */
#define __BSD_VISIBLE 1

/* Define to 1 if type `char' is unsigned and you are not using gcc.  */
#ifndef __CHAR_UNSIGNED__
/* # undef __CHAR_UNSIGNED__ */
#endif

/* Defined on Solaris to see additional function prototypes. */
/* #undef __EXTENSIONS__ */

/* Define to 'long' if <time.h> doesn't define. */
/* #undef clock_t */

/* Define to empty if `const' does not conform to ANSI C. */
/* #undef const */

/* Define to `int' if <sys/types.h> doesn't define. */
/* #undef gid_t */

/* Define to `int' if <sys/types.h> does not define. */
/* #undef mode_t */

/* Define to `long' if <sys/types.h> does not define. */
/* #undef off_t */

/* Define to `int' if <sys/types.h> does not define. */
/* #undef pid_t */

/* Define to empty if the keyword does not work. */
/* #undef signed */

/* Define to `unsigned' if <sys/types.h> does not define. */
/* #undef size_t */

/* Define to `int' if <sys/socket.h> does not define. */
/* #undef socklen_t */

/* Define to `int' if <sys/types.h> doesn't define. */
/* #undef uid_t */

/* Define to empty if the keyword does not work. */
/* #undef volatile */


/* Define the macros needed if on a UnixWare 7.x system. */
#if defined(__USLC__) && defined(__SCO_VERSION__)
#define STRICT_SYSV_CURSES /* Don't use ncurses extensions */
#endif

#endif /*Py_PYCONFIG_H*/